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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015945235.1_cds_XP_016487814.1_78506
CDS Infomation

[gene=LOC107807876] [db_xref=GeneID:107807876] [protein=proline--tRNA ligase, chloroplastic/mitochondrial-like] [protein_id=XP_016487814.1] [location=complement(join(30985..31126,31224..31307,31972..32171,32531..32692,33036..33173,33289..33495,33584..33697,33790..33876,34976..35086,35891..35947,37336..37668))] [gbkey=CDS]
Sequence

ATGGGGGCGCTAAGGCTACCCGCTTTAACTTCAATCTTCACTTCCTCCTCCGTCAGGTCG
CCGCTGGCACTGAAACACCGCCTCCGATTTCCTCTCCGTCGACCTTTCTCGGCGCAGAGC
ACCGCCGAGAAAGCGGTAGCTACAGAACTTGGAGATGGAAAGGCGGCCAAAGTTGTAGAT
AAAGAGAAAGAGAGAGTGATAACTCCGCGTTCTCAGGACTTCAACGCTTGGTATTTAGAT
GTAATTGCAAATGCGGAGCTTGCTGACTATGGTCCAGTTCGTGGTACCATGGTTATTCGT
CCCTATGGTTACGCTATTTGGGAAGCTATACAGGATTACTTGAATGTGAAGTTTAAAGAA
ACTGGACACAGTAATATGTATTTCCCTCAGTTTATACCCTATTCCTTCATTGAGAAAGAA
GCTAGTCATGTTGAGGGTTTTAGTCCAGAATTAGCTCTTGTTACTGTTGGAGGAGGAAAG
GAACTTGAAGAAAAGCTTGTGGTTCGACCTACTAGTGAAACAATTGTTAATCATATGTTT
ACTCAATGGATCCACAGTTACCGTGACCTTCCTCTCATGATCAATCAGTGGGCAAATGTC
ACAAGATGGGAGATGCGAACCAAACCATTTATTAGGACGCTTGAATTTCTTTGGCAGGAG
GGCCACACTGCCCATGCCATTGCAGAGGAAGCAGAAAAAGAGGCAATGCAGATGATCGAT
GTGTATATAAAATTTGCTTATGAGCAAGCTGCAATACCTGTTATTGCAGGTAGGAAATCT
AGGGTGGAGACGTTTGCTGGTGCTTCAAGGACCTATACAATTGAAGCAATGATGGGAGAT
AGGAAGGCTTTGCAGGCTGGCACAAGCCACAACCTTGGTCAGAATTTTTCGCGTGCATTT
AATACACAGTTCACAGATGAAAATGGGCAACGGCAACATGTCTGGCAGACATCATGGGCA
ATTAGCACTCGCTTTGTGGGAGGTATCATCATGACACATGGGGATGATGCCGGCTTACTG
CTGCCCCCAAGGCTGGCACCTGTGCAGGTTGTTATTGTCCCAATATGGAAGAAGGACAAT
GAGAAGATGGGAGTTCTGACTGCTTCATCATCTGTGAAAGAAACGTTACAAGCTGCAGGG
ATAAAAGTGAAGATTGATGACACGGATCAGAGAACGCCTGGATGGAAATTCAACTTCTAT
GAAATGAAGGGAGTTCCTTTGAGGATTGAAATTGGCCCCCGAGATGTTTCAAGTGGAACC
GTGGTCATCTCTAGGAGAGATGTTCCTGGAAAGCAAGGGAAGGTTTTTGGAATATCCATG
GAGCCTTCATCCCTGGTGGCTTACGTCATAGACAAGTTGAATGAGGTTCAATCAACCCTT
TTGGAAAGGGCAACAACTTTTCGTGATAGTAACATCGTGGACGTGTATTCATATAATGAG
CTTAAGGAGGCAATAGCTCAAGGAAAGTGGGCGAGGGGGCCTTGGTCAGCTAGTGACGAG
GAAGAATTGAAGGTGAAAGAAGAAACAGGAGCAACCATTAGATGTTTCCCTTTTGAGCAG
CCTGAGGGACCAAAGAAGTGCTTGATGACTGGCAATTCAGCAGATGAAGTTGCAATATTT
GCCAAATCTTATTAG

Peptide Sequence

PEP ID

XP_016487814.1
PEP Infomation

PREDICTED: proline--tRNA ligase, chloroplastic/mitochondrial-like [Nicotiana tabacum]
Sequence

MGALRLPALTSIFTSSSVRSPLALKHRLRFPLRRPFSAQSTAEKAVATELGDGKAAKVVD
KEKERVITPRSQDFNAWYLDVIANAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKE
TGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTVGGGKELEEKLVVRPTSETIVNHMF
TQWIHSYRDLPLMINQWANVTRWEMRTKPFIRTLEFLWQEGHTAHAIAEEAEKEAMQMID
VYIKFAYEQAAIPVIAGRKSRVETFAGASRTYTIEAMMGDRKALQAGTSHNLGQNFSRAF
NTQFTDENGQRQHVWQTSWAISTRFVGGIIMTHGDDAGLLLPPRLAPVQVVIVPIWKKDN
EKMGVLTASSSVKETLQAAGIKVKIDDTDQRTPGWKFNFYEMKGVPLRIEIGPRDVSSGT
VVISRRDVPGKQGKVFGISMEPSSLVAYVIDKLNEVQSTLLERATTFRDSNIVDVYSYNE
LKEAIAQGKWARGPWSASDEEELKVKEETGATIRCFPFEQPEGPKKCLMTGNSADEVAIF
AKSY

Transcript Sequence

Gene sequence data has not been registered.